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Ontology-assisted database integration to support natural language processing and biomedical data-mining

Verschelde, Jean-Luc ; Dos Santos, Mariana Casella ; Deray, Tom ; Smith, Barry ; Ceusters, Werner

Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516)


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Abstract:
Successful biomedical data mining and information extraction require a complete picture of biological phenomena such as genes, biological processes and diseases as these exist on different levels of granularity. To realize this goal, several freely available heterogeneous databases as well as proprietary structured datasets have to be integrated into a single global customizable scheme. We will present a tool to integrate different biological data sources by mapping them to a proprietary biomedical ontology that has been developed for the purposes of making computers understand medical natural language.


Institution: Faculty of Technology, Research Groups in Informatics
DDC classification: Data processing, computer science, computer systems

Suggested Citation:
Verschelde, Jean-Luc ; Dos Santos, Mariana Casella ; Deray, Tom ; Smith, Barry ; Ceusters, Werner  (2004)  Ontology-assisted database integration to support natural language processing and biomedical data-mining. Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516), 1(1), 2004

Online-Journal: http://journal.imbio.de/index.php?paper_id=1
URL: http://biecoll.ub.uni-bielefeld.de/volltexte/2007/182



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