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PathJam: a new service for integrating biological pathway information

Glez-Pe~na, Daniel ; Reboiro-Jato, Miguel ; Domi­nguez, Rubén ; Gómez-López, Gonzalo ; Pisano, David G. ; Fdez-Riverola, Florentino

Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516)


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Abstract:
Biological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed for both (i) being intuitive for wet-lab users providing statistical enrichment analysis of pathway annotations and (ii) giving support to the development of new integrative pathway applications. PathJam's unique features and advantages include interactive graphs linking pathways and genes of interest, downloadable results in fully compatible formats, GSEA compatible output files and a standardized RESTful API.


Institution: Faculty of Technology, Research Groups in Informatics
DDC classification: Data processing, computer science, computer systems

Suggested Citation:
Glez-Pe~na, Daniel ; Reboiro-Jato, Miguel ; Domi­nguez, Rubén ; Gómez-López, Gonzalo ; Pisano, David G. ; Fdez-Riverola, Florentino  (2010)  PathJam: a new service for integrating biological pathway information. Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516), 7(1), 2010

Online-Journal: http://journal.imbio.de/article.php?aid=147
URL: http://biecoll.ub.uni-bielefeld.de/volltexte/2010/5048



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