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Rapid development of proteomic applications with the AIBench framework

López-Fernández, Hugo ; Reboiro-Jato, Miguel ; Glez-Peña, Daniel ; Méndez Reboredo, José Ramón ; Santos, Hugo Miguel ; Carreira, Ricardo Jorge ; Capelo-Martinez, José Luis ; Fdez-Riverola, Florentino

Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516)


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Abstract:
In this paper we present two case studies of Proteomics applications development using the AIBench framework, a Java desktop application framework mainly focused in scientific software development. The applications presented in this work are Decision Peptide-Driven, for rapid and accurate protein quantification, and Bacterial Identification, for Tuberculosis biomarker search and diagnosis. Both tools work with mass spectrometry data, specifically with MALDI-TOF spectra, minimizing the time required to process and analyze the experimental data.


Institution: Faculty of Technology, Research Groups in Informatics
DDC classification: Data processing, computer science, computer systems

Suggested Citation:
López-Fernández, Hugo ; Reboiro-Jato, Miguel ; Glez-Peña, Daniel ; Méndez Reboredo, José Ramón ; Santos, Hugo Miguel ; Carreira, Ricardo Jorge ; Capelo-Martinez, José Luis ; Fdez-Riverola, Florentino  (2011)  Rapid development of proteomic applications with the AIBench framework. Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516), 8(3), 2011

Online-Journal: http://journal.imbio.de/article.php?aid=171
URL: http://biecoll.ub.uni-bielefeld.de/volltexte/2011/5187



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