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Clustering of Biological Datasets in the Era of Big Data

Röttger, Richard

Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516)


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Abstract:
Clustering is a long-standing problem in computer science and is applied in virtually any scientific field for exploring the inherent structure of datasets. In biomedical research, clustering tools have been utilized in manifold areas, among many others in expression analysis, disease subtyping or protein research. A plethora of different approaches have been developed but there is only little guideline what approach is the optimal in what particular situation. Furthermore, a typical cluster analysis is an entire process with several highly interconnected steps; from preprocessing, proximity calculation, the actual clustering to evaluation and optimization. Only when all steps seamlessly work together, an optimal result can be achieved. This renders a cluster analyses tiresome and error-prone especially for non-experts. A mere trial-and-error approach renders increasingly infeasible when considering the tremendous growth of available datasets; thus, a strategic and thoughtful course of action is crucial for a cluster analysis. This manuscript provides an overview of the crucial steps and the most common techniques involved in conducting a state-of-the-art cluster analysis of biomedical datasets.


Institution: Faculty of Technology, Research Groups in Informatics
DDC classification: Data processing, computer science, computer systems

Suggested Citation:
Röttger, Richard  (2016)  Clustering of Biological Datasets in the Era of Big Data. Journal of Integrative Bioinformatics - JIB (ISSN 1613-4516), 13(1), 2016

Online-Journal: http://journal.imbio.de/article.php?aid=300
URL: http://biecoll.ub.uni-bielefeld.de/volltexte/2017/5438



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